Perbase v1.4.1 release
https://github.com/sstadick/perbase/releases/tag/v1.4.1
Major performance win when using an input regions file with many small sites suggested by @zhangzhen (gh username). Switches the bam/cram reader to a threadlocal for a 2-4x speedup.
GitHubRelease v1.4.1 · sstadick/perbasePerformance: reuse one indexed BAM/CRAM reader per worker thread in base-depth and both only-depth modes instead of reopening the input for every region (#110). Fix: populate REF_BASE for uncovered...
commit 2badf88